Manager Instrument Software Engineering

ABOUT GENALYTE

At Genalyte, we’re revolutionizing diagnostic testing to empower a healthier future. Genalyte is a San Diego-based diagnostics company developing the Merlin platform, a novel photonic ring resonator-based system designed to deliver rapid, multiplexed diagnostic results. We believe that timely and accurate health insights shouldn’t be a luxury, but a necessity. We are driven by a vision where advanced diagnostic capabilities are accessible, efficient, and seamlessly integrated into healthcare. Genalyte is more than just a laboratory; we are advocates for health empowerment, dedicated to providing insights that can transform lives and communities.

WHY WORK FOR US

Joining Genalyte at this pivotal pre-commercial stage means your work will have real, visible impact — on our technology, our culture, and ultimately on how diagnostic testing is delivered to patients. Regardless of your role, you'll be part of a collaborative team working closely with leadership to build something meaningful from the ground up. Genalyte offers competitive compensation including base salary, equity participation, and a comprehensive benefits package. This is a rare opportunity to grow alongside a high-impact company at a genuinely exciting moment in its journey.

POSITION SUMMARY

The Manager, Instrument Software Engineering will lead a team of software developers in development and support of embedded and application software that runs on Genalyte’s instruments. You will collaborate closely with cross-functional leadership to plan and execute development timelines in support of company goals and product excellence.  You’ll have direct responsibility for the employees in your team and will be responsible for their career development, technical oversight, and project management.  This remains a very hands-on role, so you will be expected to contribute significantly through individual software development activities.

ESSENTIAL FUNCTIONS & RESPONSIBILITIES

These may include but are not limited to:

• Developing software components and participating in integration of software components
• Developing software tools to facilitate software testing and integration activities
• Leading architecture definition for instrument software
• Mentoring team members
• Performing software design reviews and auditing implementation of software by more junior members of the team
• Developing team members through a progression of positions of increasing responsibility
• Representing the software functional group at cross-functional meetings
• Troubleshooting complex system issues including both hardware and software

TECHNICAL KNOWLEDGE

• Strong expertise in embedded software system design and concepts
• Deep experience with one or more programming languages such as C/C++/C#/Python/Java
• Experience with build systems, CI/CD, unit testing and general best practices in SW development
• Proficient knowledge of networking and familiarity with Unix and Windows operating systems
• Strong debugging skills
• Experience developing architectures for distributed embedded systems
• Expert level knowledge of software requirements management, issue tracking, and project management using tools such as Jira and Confluence
• Background in medical device software standards like ISO 13485 and IEC 62304

EDUCATION, EXPERIENCE, KNOWLEDGE, SKILLS & ABILITIES

• Bachelor’s degree or Master’s degree in Computer Science, Computer Engineering, Electrical Engineering, or similar field
• Prior experience in medical devices, diagnostics (IVD), or healthcare technology in a regulated environment is a strong preference 
• Significant professional experience delivering embedded software products
• Strong analytical and problem-solving skills
• Excellent communication and teamwork abilities
• Ability to author and present technical documents 
• Leadership and mentoring skills
• Career development for team members
• Experience in overseeing performance management 

PHYSICAL REQUIREMENTS & WORK ENVIRONMENT

This is a primarily office-based role in San Diego, CA. 

COMPENSATION

The base salary range for this role is $185,000 - $210,000 per year. Individual pay may vary based on job-related skills, experience, and relevant education or training. In addition to base salary, this role includes meaningful equity participation, eligibility for the annual target bonus plan, and a comprehensive benefits package (health, dental, vision, and flexible time off policy).

EQUAL EMPLOYMENT OPPORTUNITY

Genalyte, Inc. is an equal opportunity employer. We celebrate diversity and are committed to creating an inclusive environment for all employees. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, veteran status, or any other legally protected characteristic.